Package: polySegratio 0.2-6

polySegratio: Simulate and Test Marker Dosage for Dominant Markers in Autopolyploids

Perform classic chi-squared tests and Ripol et al(1999) binomial confidence interval approach for autopolyploid dominant markers. Also, dominant markers may be generated for families of offspring where either one or both of the parents possess the marker. Missing values and misclassified markers may be generated at random.

Authors:Peter Baker [aut, cre]

polySegratio_0.2-6.tar.gz
polySegratio_0.2-6.zip(r-4.7-any)polySegratio_0.2-6.zip(r-4.6-any)polySegratio_0.2-6.zip(r-4.5-any)
polySegratio_0.2-6.tgz(r-4.6-any)polySegratio_0.2-6.tgz(r-4.5-any)
polySegratio_0.2-6.tar.gz(r-4.7-any)polySegratio_0.2-6.tar.gz(r-4.6-any)
polySegratio_0.2-6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
polySegratio/json (API)

# Install 'polySegratio' in R:

install.packages('polySegratio', repos = c('https://petebaker.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/petebaker/polysegratio/issues

On CRAN:

4.64 score 1 packages 29 scripts 266 downloads 18 exports 2 dependencies

Last updated from:ad23857559. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	139
source / vignettes	OK	167
linux-release-x86_64	OK	186
macos-release-arm64	OK	95
macos-oldrel-arm64	OK	109
windows-devel	OK	172
windows-release	OK	67
windows-oldrel	OK	68
wasm-release	OK	127

Exports:addMisclass addMissing autoFill divide.autoMarkers expected.segRatio makeLabel plot.segRatio plot.simAutoCross plot.simAutoMarkers print.divideAutoMarkers print.segRatio print.simAutoCross print.simAutoMarkers print.testSegRatio segregationRatios sim.autoCross sim.autoMarkers test.segRatio

Dependencies:gdata gtools

polySegratio: An R library for autopolyploid segregation analysis

Rendered frompolySegratio-overview.Rmdusingknitr::rmarkdown

Last update: 2026-02-26
Started: 2026-02-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Segregation Ratios for Autoployploids	polySegratio-package polySegratio
Misclassifies marker data in objects of class autoMarker or autoCross	addMisclass
Adds missing data to objects of class autoMarker or autoCross	addMissing
Automatically fill out blanks of a vector with the preceding label	autoFill
Divide markers by parental type	divide.autoMarkers
S3 class divideAutoMarkers	divideAutoMarkers
Compute theoretical segregation proportions for regular autopolyploids	expected.segRatio
Generate labels from two columns where blanks in first column are replaced by preceding non-blank label	makeLabel
Plot segregation ratios for either observed or simulated marker data	plot.segRatio plot.simAutoCross plot.simAutoMarkers
Print segregation ratios	print.segRatio
Print objects of class simAutoMarkers	print.divideAutoMarkers print.simAutoCross print.simAutoMarkers
Print objects of class testSegRatio	print.testSegRatio
S3 class segRatio	segRatio
Compute observed segregation proportions for dominant markers in autopolyploids	segregationRatios
Simulate dominant markers for an autopolyploid cross for all parental types	sim.autoCross
Simulates dominant markers from an autopolyploid cross	sim.autoMarkers
S3 class simAutoCross	simAutoCross
S3 class simAutoMarkers	simAutoMarkers
Classic tests for assessing marker dosage in autopolyploids	test.segRatio
S3 class testSegRatio	testSegRatio